A B C F G M P R S U W

A

add(StatusScreen) - Method in class Updater
 

B

blankBuild(CnvWrapper) - Method in class CommandLineInterface
 
build(String, CnvWrapper) - Method in class CommandLineInterface
build an instance of CommandLineInterface, generating a call to Combined_CNV using the processGen string.
build(String) - Method in class FileEditor
 
build() - Method in class Grapher
 
build(String) - Method in class StatusScreen
 

C

cnvDirectory - Variable in class CnvWrapper
 
CnvWrapper - Class in <Unnamed>
CnvWrapper is a facade for Combined_CNV written by Stephan Sanders and Christopher Mason it uses a Java interface to provide simple and intuitive commands that are backed by the perl script.
CnvWrapper() - Constructor for class CnvWrapper
Constructor for CnvWrapper, this code also contains the startup information for each proces in the menu, to add a new function, simply follow the form below
CommandLineInterface - Class in <Unnamed>
CommandLineInterface instances populate the desktop pane of CNVisor, whenever a Combined_CNV function is called.
CommandLineInterface(String, boolean, boolean, boolean, boolean) - Constructor for class CommandLineInterface
 
createGraph(File) - Method in class Grapher
 
currDir - Variable in class CnvWrapper
 
currentWorkingDirectoryLabel - Variable in class CnvWrapper
 

F

FileEditor - Class in <Unnamed>
a class to read and write to text files interactively from the desktop pane.
FileEditor(String, boolean, boolean, boolean, boolean) - Constructor for class FileEditor
inherited constructor

G

Grapher - Class in <Unnamed>
takes information from a text file, and loads it into an array of hashes that represent the graph, the actual graphing is yet to be implemented.
Grapher(String, boolean, boolean, boolean, boolean) - Constructor for class Grapher
Constructor for objects of class Grapher

M

main(String[]) - Static method in class CnvWrapper
 
makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class SpringUtilities
Aligns the first rows * cols components of parent in a grid.
makeGrid(Container, int, int, int, int, int, int) - Static method in class SpringUtilities
Aligns the first rows * cols components of parent in a grid.

P

PopWindow - Class in <Unnamed>
PopWindow is an extension of the JDialog class and is an instance of a pop up box that allows for the user to input required fields for CombinedCNV after the input button is pressed, the PopWindow will close and write to the log.txt file any commands inputted.
PopWindow(CnvWrapper, String[], String, String) - Constructor for class PopWindow
constructs an instance of PopWindow, the only real work that needs to be done, the PopWindow parent CnvWrapper is used to write out and call perl, and it works like a charm the array log is used to determine the number of inputs and varies as per the Combined_CNV function that needs to be done.
printSizes(Component) - Static method in class SpringUtilities
A debugging utility that prints to stdout the component's minimum, preferred, and maximum sizes.

R

reload() - Method in class FileEditor
 
reload() - Method in class StatusScreen
 
run() - Method in class Updater
 
runPerl(String) - Method in class CnvWrapper
runPerl is used to write a specified command to the log.txt file, and then to call the perlscript Combined_CNVvonline2.pl which reads and feeds off of this log.txt file

S

SpringUtilities - Class in <Unnamed>
A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.
SpringUtilities() - Constructor for class SpringUtilities
 
StatusScreen - Class in <Unnamed>
a class to bring up various text files up on the home destop pane of CnvWrapper.
StatusScreen(String, boolean, boolean, boolean, boolean) - Constructor for class StatusScreen
inherited constructor

U

Updater - Class in <Unnamed>
essentially useless
Updater() - Constructor for class Updater
 

W

workingDirectoryMenu - Variable in class CnvWrapper
 

A B C F G M P R S U W