Serialized Form


Package kea.programs.pintail

Class kea.programs.pintail.ColouredNumberField extends javax.swing.JTextField implements Serializable

Serialized Fields

_decimalPlaces

int _decimalPlaces

_value

double _value

_color

java.awt.Color _color

Class kea.programs.pintail.GraphPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_figureLegend

javax.swing.JTextPane _figureLegend

_saveGraphAction

javax.swing.Action _saveGraphAction

_printGraphAction

javax.swing.Action _printGraphAction

_showDataAction

javax.swing.Action _showDataAction

_graphPopupMenu

javax.swing.JPopupMenu _graphPopupMenu

_graph

kea.programs.plot.Graph _graph

_owner

javax.swing.JFrame _owner

_scoresCoordinateCollection

kea.programs.plot.CoordinateCollection _scoresCoordinateCollection

_expectedScoresCoordinateCollection

kea.programs.plot.CoordinateCollection _expectedScoresCoordinateCollection

_expectedScoresLowCoordinateCollection

kea.programs.plot.CoordinateCollection _expectedScoresLowCoordinateCollection

_expectedScoresHighCoordinateCollection

kea.programs.plot.CoordinateCollection _expectedScoresHighCoordinateCollection

_graphFile

java.io.File _graphFile

_showFigureLegendTitle

boolean _showFigureLegendTitle

Class kea.programs.pintail.InformationPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_observedScoresMeanLabel

javax.swing.JLabel _observedScoresMeanLabel

_deviationFromExpectationLabel

javax.swing.JLabel _deviationFromExpectationLabel

_sequence1LengthLabel

javax.swing.JLabel _sequence1LengthLabel

_sequence2LengthLabel

javax.swing.JLabel _sequence2LengthLabel

Class kea.programs.pintail.InformationPanel1 extends javax.swing.JPanel implements Serializable

Serialized Fields

_text

javax.swing.JTextPane _text

Class kea.programs.pintail.InformationPanel2 extends javax.swing.JPanel implements Serializable

Serialized Fields

_text

javax.swing.JTextPane _text

Class kea.programs.pintail.MainClass extends javax.swing.JFrame implements Serializable

Serialized Fields

_resultsPanel

ResultsPanel _resultsPanel

_splashScreen

kea.programs.splashScreens.SplashScreen _splashScreen

_showToolTips

boolean _showToolTips

_helpAction

javax.swing.Action _helpAction

_aboutAction

javax.swing.Action _aboutAction

_showToolTipsAction

javax.swing.Action _showToolTipsAction

_runAction

javax.swing.Action _runAction

_progressBar

javax.swing.JProgressBar _progressBar

_sequencePanel1

kea.programs.text.SequencePanel _sequencePanel1

_sequencePanel2

kea.programs.text.SequencePanel _sequencePanel2

_windowSizeSpinner

javax.swing.JSpinner _windowSizeSpinner

_stepSizeSpinner

javax.swing.JSpinner _stepSizeSpinner

_consensus

java.lang.String _consensus

_spinnerChangeListener

javax.swing.event.ChangeListener _spinnerChangeListener

_clustal

kea.thirdParty.clustal.Clustal _clustal

_helpSet

javax.help.HelpSet _helpSet

_helpBroker

javax.help.HelpBroker _helpBroker

_helpActionListener

java.awt.event.ActionListener _helpActionListener

Class kea.programs.pintail.MainPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_resultsPanel

ResultsPanel _resultsPanel

_owner

javax.swing.JFrame _owner

_runAction

javax.swing.Action _runAction

_progressBar

javax.swing.JProgressBar _progressBar

_sequencePanel1

kea.programs.text.SequencePanel _sequencePanel1

_sequencePanel2

kea.programs.text.SequencePanel _sequencePanel2

_windowSizeSpinner

javax.swing.JSpinner _windowSizeSpinner

_stepSizeSpinner

javax.swing.JSpinner _stepSizeSpinner

_consensus

java.lang.String _consensus

_spinnerChangeListener

javax.swing.event.ChangeListener _spinnerChangeListener

_clustal

kea.thirdParty.clustal.Clustal _clustal

_seq1

java.lang.String _seq1

_seq2

java.lang.String _seq2

_ref

java.lang.String _ref

Class kea.programs.pintail.MessagePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_conclusionText

javax.swing.JTextPane _conclusionText

_text

javax.swing.JTextPane _text

_cutOffType

CutOffType _cutOffType

_trafficLight

TrafficLight _trafficLight

_scrollableConclusion

boolean _scrollableConclusion

Class kea.programs.pintail.OLD_MainClass extends javax.swing.JFrame implements Serializable

Serialized Fields

_splashScreen

kea.programs.splashScreens.SplashScreen _splashScreen

_showToolTips

boolean _showToolTips

_helpAction

javax.swing.Action _helpAction

_aboutAction

javax.swing.Action _aboutAction

_showToolTipsAction

javax.swing.Action _showToolTipsAction

_runAction

javax.swing.Action _runAction

_updateAction

javax.swing.Action _updateAction

_progressBar

javax.swing.JProgressBar _progressBar

_sequencePanel1

kea.programs.text.SequencePanel _sequencePanel1

_sequencePanel2

kea.programs.text.SequencePanel _sequencePanel2

_windowSizeSpinner

javax.swing.JSpinner _windowSizeSpinner

_stepSizeSpinner

javax.swing.JSpinner _stepSizeSpinner

_graph

kea.programs.plot.Graph _graph

_errorGraph

kea.programs.plot.Graph _errorGraph

_printGraphAction

javax.swing.Action _printGraphAction

_saveGraphAction

javax.swing.Action _saveGraphAction

_showDataAction

javax.swing.Action _showDataAction

_graphPopupMenu

javax.swing.JPopupMenu _graphPopupMenu

_graphFile

java.io.File _graphFile

_scoresCoordinateCollection

kea.programs.plot.CoordinateCollection _scoresCoordinateCollection

_consensus

java.lang.String _consensus

_spinnerChangeListener

javax.swing.event.ChangeListener _spinnerChangeListener

_meanField

kea.programs.text.NumberField _meanField

_sdField

kea.programs.text.NumberField _sdField

_cvField

kea.programs.text.NumberField _cvField

_rcField

kea.programs.text.NumberField _rcField

Class kea.programs.pintail.ResultsPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_tablePanel

TablePanel _tablePanel

_graphPanel

GraphPanel _graphPanel

_informationPanel1

InformationPanel1 _informationPanel1

_informationPanel2

InformationPanel2 _informationPanel2

_messagePanel

MessagePanel _messagePanel

_cutOffType

CutOffType _cutOffType

Class kea.programs.pintail.ResultsTableDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

_table

javax.swing.JTable _table

Class kea.programs.pintail.SimpleTableDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

_table

javax.swing.JTable _table

Class kea.programs.pintail.TablePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

_cell50

javax.swing.JLabel _cell50

_cell75

javax.swing.JLabel _cell75

_cell95

javax.swing.JLabel _cell95

_cell99

javax.swing.JLabel _cell99

_cell999

javax.swing.JLabel _cell999

_title

javax.swing.JTextPane _title

_cutOffType

CutOffType _cutOffType

Class kea.programs.pintail.TrafficLight extends javax.swing.JPanel implements Serializable

Serialized Fields

_trafficLightSetting

TrafficLightSetting _trafficLightSetting

_iconComponent

javax.swing.JLabel _iconComponent