kea.programs.jPrimrose
Class OligoDesignInfo

java.lang.Object
  extended by kea.programs.jPrimrose.OligoDesignInfo

public class OligoDesignInfo
extends java.lang.Object

Simple class for storing oligo design information (generated by FindOligosDialog for display by SearchDatabaseDialog.)

Version:
2.17.
Author:
Kevin Ashelford.

Constructor Summary
OligoDesignInfo(int maxDegeneracy, int oligoLength, int total)
          Creates a new instance of OligoDesignInfo.
 
Method Summary
 int getMaximumDegeneracy()
          Returns the maximum number of degenerate bases allowed, as specified by the user.
 int getOligoLength()
          Returns the oligonucleotide length specified by the user.
 int getTotalOligos()
          Returns total number of oligos identified by program.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OligoDesignInfo

public OligoDesignInfo(int maxDegeneracy,
                       int oligoLength,
                       int total)
Creates a new instance of OligoDesignInfo.

Parameters:
maxDegeneracy - Maximum number of degenerate bases in designed oligos, as specified by the user.
oligoLength - Length of oligos, as specified by user.
total - Total number of oligos identified.
Method Detail

getMaximumDegeneracy

public int getMaximumDegeneracy()
Returns the maximum number of degenerate bases allowed, as specified by the user.

Returns:
Maximum degeneracy.

getOligoLength

public int getOligoLength()
Returns the oligonucleotide length specified by the user.

Returns:
Oligonucleotide length.

getTotalOligos

public int getTotalOligos()
Returns total number of oligos identified by program.