Serialized Form


Package kea.programs.jPrimrose

Class kea.programs.jPrimrose.BooleanTableCellEditor extends javax.swing.DefaultCellEditor implements Serializable

Class kea.programs.jPrimrose.BooleanTableCellRenderer extends javax.swing.JCheckBox implements Serializable

Class kea.programs.jPrimrose.ChooseTargetDialog extends kea.programs.dialogBoxes.databaseDialog.AbstractSearchDatabaseDialog implements Serializable

Serialized Fields

_table

javax.swing.JTable _table

_model

kea.programs.jPrimrose.ChooseTargetDialogTableModel _model

_database

kea.database.Database _database

_owner

MainClass _owner

_resultsFile

java.io.File _resultsFile

_helpMenu

javax.swing.JMenu _helpMenu

_toolBar

javax.swing.JToolBar _toolBar

_rootVisible

boolean _rootVisible

_rootVisibleAction

kea.programs.jPrimrose.ChooseTargetDialog.RootVisibleAction _rootVisibleAction

_dialogResult

kea.programs.dialogBoxes.DialogResult _dialogResult

_tree

javax.swing.JTree _tree

Class kea.programs.jPrimrose.ChooseTargetDialogTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class kea.programs.jPrimrose.ChooseTargetDialogTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

Class kea.programs.jPrimrose.FindOligoDialogTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class kea.programs.jPrimrose.FindOligosDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

_targetCollection

TargetCollection _targetCollection

_helpMenu

javax.swing.JMenu _helpMenu

_database

kea.database.Database _database

_abortParser

boolean _abortParser

_progressComponent

kea.programs.progress.ProgressComponent _progressComponent

_sequenceBuffer

java.util.ArrayList<E> _sequenceBuffer

_resultsTextArea

javax.swing.JTextArea _resultsTextArea

_oligoLengthSpinner

javax.swing.JSpinner _oligoLengthSpinner

_degenerateBaseSpinner

javax.swing.JSpinner _degenerateBaseSpinner

_dialogResult

kea.programs.dialogBoxes.DialogResult _dialogResult

_acceptAction

javax.swing.Action _acceptAction

_resetAction

javax.swing.Action _resetAction

_cancelAction

javax.swing.Action _cancelAction

_findAction

javax.swing.Action _findAction

_findButton

kea.programs.buttons.KeaButton _findButton

_oligoDatabase

PrimroseOligoDatabase _oligoDatabase

_model

FindOligosDialogTableModel _model

_oligoDesignInfo

OligoDesignInfo _oligoDesignInfo

_notepadAction

javax.swing.Action _notepadAction

_initialOligoLength

int _initialOligoLength

_initialDegeneracy

int _initialDegeneracy

_oligoLengthUsedToGenerateOligos

int _oligoLengthUsedToGenerateOligos

_degeneracyUsedToGenerateOligos

int _degeneracyUsedToGenerateOligos

Class kea.programs.jPrimrose.FindOligosDialogTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

_columnNames

java.lang.String[] _columnNames

_columnClasses

java.lang.Class<T>[] _columnClasses

_targetCollection

TargetCollection _targetCollection

Class kea.programs.jPrimrose.FloatTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Serialized Fields

_numberFormat

java.text.NumberFormat _numberFormat

Class kea.programs.jPrimrose.IntegerTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class kea.programs.jPrimrose.MainClass extends javax.swing.JFrame implements Serializable

Serialized Fields

_splashScreen

kea.programs.splashScreens.SplashScreen _splashScreen

_showToolTips

boolean _showToolTips

_database

kea.database.Database _database

_oligoDatabase

PrimroseOligoDatabase _oligoDatabase

_targetCollection

TargetCollection _targetCollection

_oligoDesignInfo

OligoDesignInfo _oligoDesignInfo

_projectFile

java.io.File _projectFile

_projectFileFilter

ProjectFileFilter _projectFileFilter

_helpAction

javax.swing.Action _helpAction

_aboutAction

javax.swing.Action _aboutAction

_selectDatabaseAction

javax.swing.Action _selectDatabaseAction

_chooseTargetAction

javax.swing.Action _chooseTargetAction

_findOligosAction

javax.swing.Action _findOligosAction

_searchDatabaseAction

javax.swing.Action _searchDatabaseAction

_newProjectAction

javax.swing.Action _newProjectAction

_openProjectAction

javax.swing.Action _openProjectAction

_saveProjectAction

javax.swing.Action _saveProjectAction

_saveAsProjectAction

javax.swing.Action _saveAsProjectAction

_notepadAction

javax.swing.Action _notepadAction

_exitAction

javax.swing.Action _exitAction

_selectDatabaseButton

kea.programs.buttons.KeaButton _selectDatabaseButton

_chooseTargetButton

kea.programs.buttons.KeaButton _chooseTargetButton

_findOligosButton

kea.programs.buttons.KeaButton _findOligosButton

_searchDatabaseButton

kea.programs.buttons.KeaButton _searchDatabaseButton

_helpSet

javax.help.HelpSet _helpSet

_helpBroker

javax.help.HelpBroker _helpBroker

_helpActionListener

java.awt.event.ActionListener _helpActionListener

Class kea.programs.jPrimrose.PrimroseOligoTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class kea.programs.jPrimrose.PrimroseTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class kea.programs.jPrimrose.Report extends javax.swing.JDialog implements Serializable

Serialized Fields

_maxMismatches

int _maxMismatches

_oligoPanel

kea.programs.text.OligoPanel _oligoPanel

_database

kea.database.Database _database

_oligo

PrimroseOligo _oligo

_helpMenu

javax.swing.JMenu _helpMenu

_searchAction

javax.swing.Action _searchAction

_abortAction

javax.swing.Action _abortAction

_showDataAction

javax.swing.Action _showDataAction

_printGraphAction

javax.swing.Action _printGraphAction

_saveGraphAction

javax.swing.Action _saveGraphAction

_enableSelectionAction

javax.swing.Action _enableSelectionAction

_notepadAction

javax.swing.Action _notepadAction

_mismatchSpinner

javax.swing.JSpinner _mismatchSpinner

_abortParser

boolean _abortParser

_dataGenerated

boolean _dataGenerated

_progressComponent

kea.programs.progress.ProgressComponent _progressComponent

_databaseTree

kea.programs.database.DatabaseTree _databaseTree

_dataTableVisible

boolean _dataTableVisible

_graphTableDialog

ReportGraphTableDialog _graphTableDialog

_graphPopupMenu

javax.swing.JPopupMenu _graphPopupMenu

_graph

kea.programs.plot.Graph _graph

_graphFile

java.io.File _graphFile

_table

javax.swing.JTable _table

_primroseTreeCellRenderer

kea.programs.jPrimrose.PrimroseTreeCellRenderer _primroseTreeCellRenderer

_primroseTableCellRenderer

PrimroseTableCellRenderer _primroseTableCellRenderer

_reportTreeCellRenderer

kea.programs.jPrimrose.ReportTreeCellRenderer _reportTreeCellRenderer

_reportTableCellRenderer

kea.programs.jPrimrose.ReportTableCellRenderer _reportTableCellRenderer

_openDatabaseAction

kea.programs.database.OpenDatabaseAction _openDatabaseAction

Class kea.programs.jPrimrose.ReportGraphTableDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

_table

javax.swing.JTable _table

Class kea.programs.jPrimrose.ReportGraphTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

_columnNames

java.lang.String[] _columnNames

_columnClasses

java.lang.Class<T>[] _columnClasses

_coordinateCollections

kea.programs.plot.CoordinateCollection[] _coordinateCollections

Class kea.programs.jPrimrose.SearchDatabaseDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

_database

kea.database.Database _database

_oligoDatabase

PrimroseOligoDatabase _oligoDatabase

_targetCollection

TargetCollection _targetCollection

_oligoDesignInfo

OligoDesignInfo _oligoDesignInfo

_helpMenu

javax.swing.JMenu _helpMenu

_dialogResult

kea.programs.dialogBoxes.DialogResult _dialogResult

_progressComponent

kea.programs.progress.ProgressComponent _progressComponent

_progressMessage

javax.swing.JLabel _progressMessage

_searchButton

kea.programs.buttons.KeaButton _searchButton

_searchAction

javax.swing.Action _searchAction

_abortAction

javax.swing.Action _abortAction

_helpAction

javax.swing.Action _helpAction

_aboutAction

javax.swing.Action _aboutAction

_resultTable

javax.swing.JTable _resultTable

_resultsTableModel

SearchDatabaseDialogTableModel _resultsTableModel

_nonTargetSpinner

javax.swing.JSpinner _nonTargetSpinner

_abortParser

boolean _abortParser

_notepadAction

javax.swing.Action _notepadAction

_openDatabaseAction

javax.swing.Action _openDatabaseAction

_databaseTree

kea.programs.database.DatabaseTree _databaseTree

Class kea.programs.jPrimrose.SearchDatabaseDialogTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

_columnNames

java.lang.String[] _columnNames

_columnClasses

java.lang.Class<T>[] _columnClasses

_oligos

PrimroseOligo[] _oligos

Class kea.programs.jPrimrose.SimpleChooseTargetDialog extends kea.programs.dialogBoxes.databaseDialog.AbstractTreeAndTableDatabaseDialog implements Serializable

Serialized Fields

_table

javax.swing.JTable _table

_database

kea.database.Database _database

_owner

javax.swing.JFrame _owner

_helpMenu

javax.swing.JMenu _helpMenu

_rootVisible

boolean _rootVisible

_rootVisibleAction

kea.programs.jPrimrose.SimpleChooseTargetDialog.RootVisibleAction _rootVisibleAction

_dialogResult

kea.programs.dialogBoxes.DialogResult _dialogResult

_tree

javax.swing.JTree _tree

_memory

java.util.Stack<E> _memory

_notepadAction

javax.swing.Action _notepadAction