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java.lang.Objectkea.programs.jPrimrose.SearchDatabase2
public class SearchDatabase2
Searches database with supplied oligonucleotides.
Constructor Summary | |
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SearchDatabase2(java.awt.Window owner,
kea.database.Database database,
PrimroseOligo oligo,
kea.programs.progress.ProgressComponent progressComponent,
kea.sequences.nucleicAcid.search.SearchResult maxMismatches,
kea.event.AbortListener abortListener)
Creates a new instance of SearchDatabase . |
Method Summary | |
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void |
run()
Runs search, generating a collection of OligoSearchResult objects. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SearchDatabase2(java.awt.Window owner, kea.database.Database database, PrimroseOligo oligo, kea.programs.progress.ProgressComponent progressComponent, kea.sequences.nucleicAcid.search.SearchResult maxMismatches, kea.event.AbortListener abortListener)
SearchDatabase
.
owner
- Owning window component.database
- Record database to search.oligo
- Oligo record to use in search.progressComponent
- ProgressComponent object to update.maxMismatches
- Maximum number of mismatches allowed.abortListener
- Listens for abort signal from parser.Method Detail |
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public void run()
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