SNPSIM 0.8 README
SNPsim has been written by David Posada with much help from Carsten Wiuf . The first part of the program was written at Brigham Young University (Utah, US), the last part of the program was written while being at Variagenics, Inc (Boston, US). Mainteinance and future updates are done at the University of Vigo (Spain).
Current version is 0.8. See the version history in the documentation.
Documentation
The file SNPsim0.8.pdf includes detailed documentation. The user is advised to read this document before using the program.
Installation, compilation and execution
(1) Install: you should be in the same directory as the file snpsim0.8.tar.gz . Now type:
gunzip snpsim-0.8.tar.gz
tar -xvf snpsim-0.8.tar
You should see now a folder called snpsim-0.8 . Move into the folder to compile and run the program.
(2) Compile: type make.The program should compile without much problem in any Unix-like environment (Linux, MacOSX, etc.). The makefile is provided for the gcc compiler, but if you have cc instead, just change gcc for cc in this file.
(3) Run: type ./snpsim0.8. Arguments can be entered in the command line or from a parameter file. See the documentation for details.
Disclaimer
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
David Posada - dposada@uvigo.es
May 2004