mic.rules
Class SA19

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer>
              extended by toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
                  extended by toxTree.tree.rules.RuleAromatic
                      extended by mic.rules.SA18
                          extended by mic.rules.SA19
All Implemented Interfaces:
ambit2.smarts.query.ISmartsPatternFactory, java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IAlertCounter, IRuleSMARTSubstructures

public class SA19
extends SA18

If the set of fused rings contains > 2 aromatic rings and > 1 heteroaromatic rings, the rule returns true.

Author:
nina
See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
containsAllSubstructures, final_and_patch, smartsPatterns
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
SA19()
           
 
Method Summary
protected  boolean acceptRingSet(org.openscience.cdk.interfaces.IRingSet ringset, int heteroaromaticrings, int aromaticrings)
           
 java.lang.String getImplementationDetails()
           
protected  boolean isAromaticRing(int aromaticAtoms, int allAtoms)
           
 
Methods inherited from class mic.rules.SA18
getNumberOfAromaticAtoms, incrementCounter, isHeterocyclic, isImplemented, verifyRule
 
Methods inherited from class toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
createSmartsPattern, getObjectToVerify
 
Methods inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
addSubstructure, addSubstructure, addSubstructure, clearSubstructures, containsAllSubstructures, deleteSubstructure, equals, getSelector, getSmartsPatterns, getSubstructure, initSingleSMARTS, isAPossibleHit, removeSingleSMARTS, setContainsAllSubstructures, setSmartsPatterns, setSubstructure, setSubstructure, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

SA19

public SA19()
Method Detail

getImplementationDetails

public java.lang.String getImplementationDetails()
Specified by:
getImplementationDetails in interface IImplementationDetails
Overrides:
getImplementationDetails in class SA18

acceptRingSet

protected boolean acceptRingSet(org.openscience.cdk.interfaces.IRingSet ringset,
                                int heteroaromaticrings,
                                int aromaticrings)
Overrides:
acceptRingSet in class SA18

isAromaticRing

protected boolean isAromaticRing(int aromaticAtoms,
                                 int allAtoms)
Overrides:
isAromaticRing in class SA18


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