verhaar.rules.helper
Class RuleElementsCounter

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.RuleElements
              extended by verhaar.rules.helper.RuleElementsCounter
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IAlertCounter
Direct Known Subclasses:
Rule01, Rule11, Rule13, Rule14, Rule15, Rule16, Rule17

public class RuleElementsCounter
extends RuleElements
implements IAlertCounter

See Also:
Serialized Form

Field Summary
protected  IAlertCounter alertsCounter
           
 
Fields inherited from class toxTree.tree.rules.RuleElements
comparison, elements, mode, modeAllSpecifiedElements, modeAnySpecifiedElements, modeOnlySpecifiedElements
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleElementsCounter()
           
 
Method Summary
 java.lang.String getImplementationDetails()
           
 void incrementCounter(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
          This is the core of a IDecisionRule behaviour.
 
Methods inherited from class toxTree.tree.rules.RuleElements
addElement, contains, equals, getElements, gethalogens, getMode, getSelector, getTitle, hasOnlySpecifiedElements, isImplemented, removeElement, select, setComparisonMode, setElements, setHalogens, setHalogens, setMode, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

alertsCounter

protected IAlertCounter alertsCounter
Constructor Detail

RuleElementsCounter

public RuleElementsCounter()
Method Detail

getImplementationDetails

public java.lang.String getImplementationDetails()
Specified by:
getImplementationDetails in interface IImplementationDetails

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException
Description copied from interface: IDecisionRule
This is the core of a IDecisionRule behaviour. The method returns true if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??

Specified by:
verifyRule in interface IDecisionRule
Overrides:
verifyRule in class RuleElements
Parameters:
mol - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException

incrementCounter

public void incrementCounter(org.openscience.cdk.interfaces.IAtomContainer mol)
Specified by:
incrementCounter in interface IAlertCounter


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