verhaar.rules
Class Rule141
java.lang.Object
java.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.rules.RuleOpenChain
toxTree.tree.cramer.RuleIsOpenChain
verhaar.rules.Rule141
- All Implemented Interfaces:
- java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IAlertCounter
public class Rule141
- extends RuleIsOpenChain
- implements IAlertCounter
Acyclic compound NOT containing halogen at beta-positions from unsaturations (e.g. allylic / propargilyc halogens).
- Author:
- Nina Jeliazkova jeliazkova.nina@gmail.com
Modified July 12, 2011
- See Also:
- Serialized Form
Fields inherited from class toxTree.tree.AbstractRule |
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Methods inherited from class toxTree.tree.AbstractRule |
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
alertsCounter
protected IAlertCounter alertsCounter
x
protected org.openscience.cdk.isomorphism.matchers.QueryAtomContainer x
halogens
protected static transient java.lang.String[] halogens
Rule141
public Rule141()
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
- Description copied from class:
RuleOpenChain
IDecisionRule.verifyRule(IAtomContainer)
- Specified by:
verifyRule
in interface IDecisionRule
- Overrides:
verifyRule
in class RuleOpenChain
- Parameters:
mol
- org.openscience.cdk.interfaces.AtomContainer
- Returns:
- rule result, boolean
- Throws:
DecisionMethodException
isImplemented
public boolean isImplemented()
- Specified by:
isImplemented
in interface IDecisionRule
- Overrides:
isImplemented
in class RuleOpenChain
- Returns:
- false if the rule is not implemented and true if it is
incrementCounter
public void incrementCounter(org.openscience.cdk.interfaces.IAtomContainer mol)
- Specified by:
incrementCounter
in interface IAlertCounter
getImplementationDetails
public java.lang.String getImplementationDetails()
- Specified by:
getImplementationDetails
in interface IImplementationDetails
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