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PREV NEXT | FRAMES NO FRAMES |
Packages that use IAlertCounter | |
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mic.rules | |
michaelacceptors.rules | |
mutant.rules | |
toxtree.plugins.dnabinding.rules | |
toxtree.plugins.func.rules | |
toxtree.plugins.proteinbinding.rules | |
toxtree.plugins.skinsensitisation.rules | |
toxTree.tree.rules | The package contains several generic implementations of IDecisionRule rules |
verhaar.rules | The package contains implementations of IDecisionRule
rules for VerhaarScheme decision tree. |
verhaar.rules.helper |
Uses of IAlertCounter in mic.rules |
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Classes in mic.rules that implement IAlertCounter | |
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class |
PB29
|
class |
PB30
|
class |
SA1
|
class |
SA10
|
class |
SA11
Aliphatic and aromatic aldehydes. |
class |
SA12
Quinones |
class |
SA13
|
class |
SA14
|
class |
SA15
|
class |
SA16
|
class |
SA18
TODO Reimplement PAH recognition in a more robust way, possibly by generalized Hueckel rule (Randic) |
class |
SA19
If the set of fused rings contains > 2 aromatic rings and > 1 heteroaromatic rings, the rule returns true. |
class |
SA2
SA2 |
class |
SA21
|
class |
SA22
|
class |
SA23
|
class |
SA24
|
class |
SA25
|
class |
SA26
Aromatic ring N-oxide. |
class |
SA27
Nitro aromatic (and more). |
class |
SA28
TODO - this is same as mutant.rules.SA28 -to reuse instead of copy |
class |
SA28bis
Aromatic mono- and dialkylamine (with exceptions). |
class |
SA28ter
Aromatic N-acyl amine. |
class |
SA29
|
class |
SA3
|
class |
SA30
|
class |
SA32
|
class |
SA33
|
class |
SA34
|
class |
SA35
|
class |
SA36
|
class |
SA4
|
class |
SA5
|
class |
SA6
|
class |
SA7
|
class |
SA8
|
class |
SA9
|
Fields in mic.rules declared as IAlertCounter | |
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protected IAlertCounter |
SA26.alertsCounter
|
Uses of IAlertCounter in michaelacceptors.rules |
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Classes in michaelacceptors.rules that implement IAlertCounter | |
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class |
Rule1
TODO with StructureAlertAmbit [CH]#CC=O doesn't match COC(=O)C#C while C#CC=O matches COC(=O)C#C |
class |
Rule10A
|
class |
Rule10B
|
class |
Rule12A
|
class |
Rule12B
|
class |
Rule13A
|
class |
Rule13B
|
class |
Rule2
|
class |
Rule3
|
class |
Rule4A
|
class |
Rule4B
|
class |
Rule5
|
class |
Rule6
|
class |
Rule7
|
class |
Rule8
|
class |
Rule9A
|
class |
Rule9B
|
Uses of IAlertCounter in mutant.rules |
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Classes in mutant.rules that implement IAlertCounter | |
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class |
SA1_gen
|
class |
SA10_gen
|
class |
SA11_gen
Aliphatic and aromatic aldehydes. |
class |
SA12_gen
Quinones |
class |
SA13_gen
|
class |
SA14_gen
|
class |
SA15_gen
|
class |
SA16_gen
|
class |
SA17_nogen
|
class |
SA18_gen
TODO Reimplement PAH recognition in a more robust way, possibly by generalized Hueckel rule (Randic) |
class |
SA19_gen
If the set of fused rings contains > 2 aromatic rings and > 1 heteroaromatic rings, the rule returns true. |
class |
SA2_gen
SA2_gen |
class |
SA20_nogen
|
class |
SA21_gen
|
class |
SA22_gen
|
class |
SA23_gen
|
class |
SA24_gen
|
class |
SA25_gen
|
class |
SA26_gen
Aromatic ring N-oxide. |
class |
SA27_gen
Nitro aromatic (and more). |
class |
SA28_gen
[a;!$(a(a[A;!#1])(a[A;!#1]));!$(aa[CX3](=O)[OX2H1]);!$(aa[SX4](=[OX1])(=[OX1])([O-]));!$(aaa[SX4](=[OX1])(=[OX1])([O-]));!$(aaaa[SX4](=[OX1])(=[OX1])([O-]));!$(aaaaa[SX4](=[OX1])(=[OX1])([O-]));!$(aaaaaa[SX4](=[OX1])(=[OX1])([O-]));!$(aN(CC[Cl,Br,F,I])(CC[Cl,Br,F,I]));!$(aaN(CC[Cl,Br,F,I])(CC[Cl,Br,F,I]));!$(aaaN(CC[Cl,Br,F,I])(CC[Cl,Br,F,I]));!$(aaaaN(CC[Cl,Br,F,I])(CC[Cl,Br,F,I]));!$(aaaaaN(CC[Cl,Br,F,I])(CC[Cl,Br,F,I]))]!@[$([NX3;v3]([#1,CX4,CX3])([#1,CX4,CX3])),$([NX3;v3]([OX2H])([#1,CX4,CX3])),$([NX3;v3]([#1,CX4])OC=O)] |
class |
SA28bis_gen
Aromatic mono- and dialkylamine (with exceptions). |
class |
SA28ter_gen
Aromatic N-acyl amine. |
class |
SA29_gen
|
class |
SA3_gen
|
class |
SA30_gen
|
class |
SA31a_nogen
TODO Verify how many level of recursive smarts are supported TODO verify what's wrong with matching c;R |
class |
SA31b_nogen
|
class |
SA31c_nogen
|
class |
SA37_gen
|
class |
SA38_gen
|
class |
SA39_gen_and_nogen
|
class |
SA4_gen
|
class |
SA40_nogen
|
class |
SA41_nogen
|
class |
SA42_nogen
|
class |
SA43_nogen
|
class |
SA44_nogen
|
class |
SA45_nogen
|
class |
SA46_nogen
|
class |
SA47_nogen
|
class |
SA48_nogen
|
class |
SA49_nogen
|
class |
SA5_gen
|
class |
SA50_nogen
|
class |
SA51_nogen
|
class |
SA52_nogen
|
class |
SA53_nogen
|
class |
SA54_nogen
|
class |
SA55_nogen
|
class |
SA56_nogen
|
class |
SA6_gen
|
class |
SA7_gen
|
class |
SA8_gen
|
class |
SA9_gen
|
Fields in mutant.rules declared as IAlertCounter | |
---|---|
protected IAlertCounter |
SA26_gen.alertsCounter
|
protected IAlertCounter |
SA20_nogen.alertsCounter
|
Uses of IAlertCounter in toxtree.plugins.dnabinding.rules |
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Classes in toxtree.plugins.dnabinding.rules that implement IAlertCounter | |
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class |
DNABindingRule
Parent class for all skin sens rules |
class |
SN1Rule
SNAR |
Uses of IAlertCounter in toxtree.plugins.func.rules |
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Classes in toxtree.plugins.func.rules that implement IAlertCounter | |
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class |
FG
|
class |
FG1
|
class |
FG10
|
class |
FG11
|
class |
FG12
|
class |
FG13
|
class |
FG14
|
class |
FG15
|
class |
FG16
|
class |
FG17
|
class |
FG18
|
class |
FG19
|
class |
FG2
|
class |
FG20
|
class |
FG21
|
class |
FG22
|
class |
FG23_1
|
class |
FG23_2
|
class |
FG23_3
|
class |
FG23_4
|
class |
FG23_5
|
class |
FG23_6
|
class |
FG23_7
|
class |
FG23_8
|
class |
FG23_LS
|
class |
FG24_1
|
class |
FG24_2
|
class |
FG24_3
|
class |
FG24_LS
|
class |
FG25
|
class |
FG26
|
class |
FG27
|
class |
FG28
|
class |
FG29
|
class |
FG3_1
|
class |
FG3_2
|
class |
FG3_LS
|
class |
FG30
|
class |
FG31_1
|
class |
FG31_2
|
class |
FG31_3
|
class |
FG31_4
|
class |
FG31_5
|
class |
FG31_6
|
class |
FG31_7
|
class |
FG31_8
|
class |
FG31_9
|
class |
FG31_LS
|
class |
FG32
|
class |
FG33_1
|
class |
FG33_2
|
class |
FG33_3
|
class |
FG33_4
|
class |
FG33_5
|
class |
FG33_6
|
class |
FG33_7
|
class |
FG33_8
|
class |
FG33_LS
|
class |
FG34_1
|
class |
FG34_2
|
class |
FG34_LS
|
class |
FG35_1
|
class |
FG35_10
|
class |
FG35_11
|
class |
FG35_12
|
class |
FG35_13
|
class |
FG35_2
|
class |
FG35_3
|
class |
FG35_4
|
class |
FG35_5
|
class |
FG35_6
|
class |
FG35_7
|
class |
FG35_8
|
class |
FG35_9
|
class |
FG35_LS
|
class |
FG36
|
class |
FG37_1
|
class |
FG37_2
|
class |
FG37_3
|
class |
FG37_4
|
class |
FG37_LS
|
class |
FG38
|
class |
FG39
|
class |
FG4
|
class |
FG4_1
|
class |
FG4_2
|
class |
FG4_LS
|
class |
FG40
|
class |
FG41_1
|
class |
FG41_2
|
class |
FG41_3
|
class |
FG41_4
|
class |
FG41_5
|
class |
FG41_LS
|
class |
FG42
|
class |
FG43
|
class |
FG44
|
class |
FG45
|
class |
FG46_1
|
class |
FG46_2
|
class |
FG46_LS
|
class |
FG47
|
class |
FG48_1
|
class |
FG48_2
|
class |
FG48_LS
|
class |
FG49
|
class |
FG5
|
class |
FG50_1
|
class |
FG50_2
|
class |
FG50_3
|
class |
FG50_LS
|
class |
FG51_1
|
class |
FG51_2
|
class |
FG51_3
|
class |
FG51_LS
|
class |
FG52_1
|
class |
FG52_2
|
class |
FG52_3
|
class |
FG52_LS
|
class |
FG53_1
|
class |
FG53_2
|
class |
FG53_3
|
class |
FG53_LS
|
class |
FG54
|
class |
FG55
|
class |
FG56
|
class |
FG57
|
class |
FG58
|
class |
FG59
|
class |
FG6
|
class |
FG60
|
class |
FG61
|
class |
FG62
|
class |
FG63
|
class |
FG64
|
class |
FG65
|
class |
FG66
|
class |
FG67
|
class |
FG68
|
class |
FG69
|
class |
FG7
|
class |
FG70
|
class |
FG71
|
class |
FG72
|
class |
FG73
|
class |
FG74_1
|
class |
FG74_2
|
class |
FG74_3
|
class |
FG74_4
|
class |
FG74_5
|
class |
FG74_6
|
class |
FG74_7
|
class |
FG74_LS
|
class |
FG75_1
|
class |
FG75_2
|
class |
FG75_3
|
class |
FG75_4
|
class |
FG75_LS
|
class |
FG76
|
class |
FG77
|
class |
FG78_1
|
class |
FG78_2
|
class |
FG78_3
|
class |
FG78_4
|
class |
FG78_LS
|
class |
FG79_1
|
class |
FG79_2
|
class |
FG79_3
|
class |
FG79_4
|
class |
FG79_LS
|
class |
FG8
|
class |
FG80_1
|
class |
FG80_2
|
class |
FG80_LS
|
class |
FG81_1
|
class |
FG81_2
|
class |
FG81_3
|
class |
FG81_4
|
class |
FG81_LS
|
class |
FG82_1
|
class |
FG82_2
|
class |
FG82_3
|
class |
FG82_4
|
class |
FG82_LS
|
class |
FG83_1
|
class |
FG83_2
|
class |
FG83_3
|
class |
FG83_4
|
class |
FG83_LS
|
class |
FG84_1
|
class |
FG84_2
|
class |
FG84_LS
|
class |
FG85
|
class |
FG86
|
class |
FG87
|
class |
FG88
|
class |
FG89
|
class |
FG9
|
class |
FG90
|
Uses of IAlertCounter in toxtree.plugins.proteinbinding.rules |
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Classes in toxtree.plugins.proteinbinding.rules that implement IAlertCounter | |
---|---|
class |
ProteinBindingRule
Parent class for all skin sens rules |
Uses of IAlertCounter in toxtree.plugins.skinsensitisation.rules |
---|
Classes in toxtree.plugins.skinsensitisation.rules that implement IAlertCounter | |
---|---|
class |
AcylTransferRule
Acyl transfer |
class |
MichaelAcceptorRule
Michael acceptors |
class |
ShiffBaseRule
Shiff base |
class |
SkinSensitisationRule
Parent class for all skin sens rules |
class |
SN2Rule
SN2 |
class |
SNARRule
SNAR |
Uses of IAlertCounter in toxTree.tree.rules |
---|
Classes in toxTree.tree.rules that implement IAlertCounter | |
---|---|
class |
DefaultAlertCounter
|
class |
StructureAlert
|
class |
StructureAlertAmbit
|
class |
StructureAlertCDK
|
Uses of IAlertCounter in verhaar.rules |
---|
Classes in verhaar.rules that implement IAlertCounter | |
---|---|
class |
Rule01
Consists only of C,H,N,O,S,halogens (exluding I). |
class |
Rule03
Have a molecular mass (MW) not more than 600 Daltons. |
class |
Rule11
Does not contain I. |
class |
Rule13
Contain only C&H. |
class |
Rule14
Contain only C,H and halogen. |
class |
Rule141
Acyclic compound NOT containing halogen at beta-positions from unsaturations (e.g. |
class |
Rule142
Monocyclic compounds substituted with halogens. |
class |
Rule143
Monocyclic compounds that are unsubstituted or substituted with acyclic structures containing only C&H or complying with rule Rule141 . |
class |
Rule144
Polycyclic compounds that are unsubstituted or substituted with acyclic structures containing only C&H or complying with Rule141 . |
class |
Rule15
Contain only C,H,O. |
class |
Rule16
Contain only C,H,N. |
class |
Rule161
Aliphatic secondary or tertiary amines. |
class |
Rule17
Contain only C,H,O and halogen. |
class |
Rule21
Non- or weakly acidic phenols. |
class |
Rule22
Anilines with one nitro substituent and/or one to three chlorine substituents, and/or alkyl substituents. |
class |
Rule23
Be mononitroaromatics with one or two chlorine substituents and/or alkyl substituents. |
class |
Rule25
Pyridines with one or two chlorine substituents and/or alkyl substituents. |
class |
Rule4
Compounds acting by a specific mechanism. |
class |
RuleIonicGroups
Uses QueryAssociationBond ro verify if the query compound
has an ionic bond. |
class |
RuleLogPRange
0 <= LogP <= 6. |
Fields in verhaar.rules declared as IAlertCounter | |
---|---|
protected IAlertCounter |
RuleLogPRange.alertsCounter
|
protected IAlertCounter |
RuleIonicGroups.alertsCounter
|
protected IAlertCounter |
Rule34.alertsCounter
|
protected IAlertCounter |
Rule21.alertsCounter
|
protected IAlertCounter |
Rule143.alertsCounter
|
protected IAlertCounter |
Rule141.alertsCounter
|
protected IAlertCounter |
Rule03.alertsCounter
|
Uses of IAlertCounter in verhaar.rules.helper |
---|
Classes in verhaar.rules.helper that implement IAlertCounter | |
---|---|
class |
RuleAnySubstructureCounter
|
class |
RuleElementsCounter
|
class |
RuleOnlyAllowedSubstructuresCounter
|
Fields in verhaar.rules.helper declared as IAlertCounter | |
---|---|
protected IAlertCounter |
RuleOnlyAllowedSubstructuresCounter.alertsCounter
|
protected IAlertCounter |
RuleElementsCounter.alertsCounter
|
protected IAlertCounter |
RuleAnySubstructureCounter.alertsCounter
|
|
||||||||||
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