sicret.rules
Class RuleLogP

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.RuleVerifyProperty
              extended by sicret.rules.RuleLogP
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionInteractive, IDecisionRule, IImplementationDetails, XMLSerializable
Direct Known Subclasses:
Rule11, Rule16, Rule17, Rule28, RuleLogP, RuleLogP_10_1, RuleLogP_11_4, RuleLogP_11_5, RuleLogP_11_6, RuleLogP_12_4, RuleLogP_9_4, RuleLogP1

public class RuleLogP
extends RuleVerifyProperty

LogP < 3.1.
Expects property to be read from IMolecule.getProperty(LogKow). If it is null, calculates LogP by XLogPDescriptor.

Author:
Nina Jeliazkova nina@acad.bg, Martin Martinov Modified Dec 17, 2006
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface toxTree.core.IDecisionInteractive
IDecisionInteractive.UserOptions
 
Field Summary
static java.lang.String LogKow
           
 
Fields inherited from class toxTree.tree.rules.RuleVerifyProperty
condition, condition_equals, condition_higher, condition_lower, listener, nf, options, propertyExamples, propertyName, propertyStaticValue, propertyUnits
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleLogP()
           
RuleLogP(java.lang.String propertyName, java.lang.String units, java.lang.String condition, double value)
           
 
Method Summary
 java.lang.String getImplementationDetails()
           
 java.lang.String inputProperty(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 
Methods inherited from class toxTree.tree.rules.RuleVerifyProperty
compare, getCaption, getCondition, getExampleMolecule, getExplanation, getInteractive, getListener, getOptions, getProperty, getPropertyName, getPropertyUnits, getSelector, isImplemented, removeListener, setCondition, setInteractive, setListener, setOptions, setProperty, setPropertyName, setPropertyUnits, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExamples, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

LogKow

public static java.lang.String LogKow
Constructor Detail

RuleLogP

public RuleLogP()

RuleLogP

public RuleLogP(java.lang.String propertyName,
                java.lang.String units,
                java.lang.String condition,
                double value)
Method Detail

inputProperty

public java.lang.String inputProperty(org.openscience.cdk.interfaces.IAtomContainer mol)
                               throws DecisionMethodException
Overrides:
inputProperty in class RuleVerifyProperty
Throws:
DecisionMethodException

getImplementationDetails

public java.lang.String getImplementationDetails()
Specified by:
getImplementationDetails in interface IImplementationDetails
Overrides:
getImplementationDetails in class RuleVerifyProperty


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