mutant.rules
Class SA19_gen

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer>
              extended by toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
                  extended by toxTree.tree.rules.RuleAromatic
                      extended by mutant.rules.SA18_gen
                          extended by mutant.rules.SA19_gen
All Implemented Interfaces:
ambit2.smarts.query.ISmartsPatternFactory, java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IAlertCounter, IRuleSMARTSubstructures

public class SA19_gen
extends SA18_gen

If the set of fused rings contains > 2 aromatic rings and > 1 heteroaromatic rings, the rule returns true.

Author:
nina
See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
containsAllSubstructures, final_and_patch, smartsPatterns
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
SA19_gen()
           
 
Method Summary
protected  boolean acceptRingSet(org.openscience.cdk.interfaces.IRingSet ringset, int heteroaromaticrings, int aromaticrings)
           
 java.lang.String getImplementationDetails()
           
protected  boolean isAromaticRing(int aromaticAtoms, int allAtoms)
           
 
Methods inherited from class mutant.rules.SA18_gen
getNumberOfAromaticAtoms, incrementCounter, isHeterocyclic, isImplemented, verifyRule
 
Methods inherited from class toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
createSmartsPattern, getObjectToVerify
 
Methods inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
addSubstructure, addSubstructure, addSubstructure, clearSubstructures, containsAllSubstructures, deleteSubstructure, equals, getSelector, getSmartsPatterns, getSubstructure, initSingleSMARTS, isAPossibleHit, removeSingleSMARTS, setContainsAllSubstructures, setSmartsPatterns, setSubstructure, setSubstructure, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

SA19_gen

public SA19_gen()
Method Detail

getImplementationDetails

public java.lang.String getImplementationDetails()
Specified by:
getImplementationDetails in interface IImplementationDetails
Overrides:
getImplementationDetails in class SA18_gen

acceptRingSet

protected boolean acceptRingSet(org.openscience.cdk.interfaces.IRingSet ringset,
                                int heteroaromaticrings,
                                int aromaticrings)
Overrides:
acceptRingSet in class SA18_gen

isAromaticRing

protected boolean isAromaticRing(int aromaticAtoms,
                                 int allAtoms)
Overrides:
isAromaticRing in class SA18_gen


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