toxTree.tree.rules
Class RuleRingAllowedSubstituents
java.lang.Object
java.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.AbstractRuleHilightHits
toxTree.tree.rules.RuleSubstructures
toxTree.tree.rules.RuleRings
toxTree.tree.rules.RuleRingSubstituents
toxTree.tree.rules.RuleRingAllowedSubstituents
- All Implemented Interfaces:
- java.io.Serializable, java.lang.Cloneable, IDecisionRule, IRuleSubstructures, XMLSerializable
- Direct Known Subclasses:
- Rule143, RuleCyclopropaneEtc, RuleMonocarbocyclic, RuleRingMainStrucSubstituents, RuleSomeBenzeneDerivatives
public class RuleRingAllowedSubstituents
- extends RuleRingSubstituents
A rule to analyze ring substituents
- Author:
- Nina Jeliazkova
Modified 2005-8-17
- See Also:
- Serialized Form
Fields inherited from class toxTree.tree.AbstractRule |
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Method Summary |
boolean |
isImplemented()
|
boolean |
substituentIsAllowed(org.openscience.cdk.interfaces.IAtomContainer a,
int[] place)
returns true if the substituent is allowed and false if it is forbidden
to be implemented by the inheriting class |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
IDecisionRule.verifyRule(IAtomContainer) |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
returns true if only allowed substituents are found |
Methods inherited from class toxTree.tree.rules.RuleSubstructures |
addSubstructure, clearSubstructures, equals, getIds, getQuery, getSubstructure, getSubstructures, getSubstructuresCount, removeSubstructure, setIds, setQuery, setSubstructure |
Methods inherited from class toxTree.tree.AbstractRule |
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface toxTree.core.IDecisionRule |
addPropertyChangeListener, clearFlags, clone, getEditor, getExampleMolecule, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, removePropertyChangeListener, setEditable, setExampleMolecule, setExplanation, setID, setNum, setTitle, toString |
RuleRingAllowedSubstituents
public RuleRingAllowedSubstituents()
isImplemented
public boolean isImplemented()
- Specified by:
isImplemented
in interface IDecisionRule
- Overrides:
isImplemented
in class RuleSubstructures
- Returns:
- false if the rule is not implemented and true if it is
substituentIsAllowed
public boolean substituentIsAllowed(org.openscience.cdk.interfaces.IAtomContainer a,
int[] place)
throws DecisionMethodException
- Description copied from class:
RuleRingSubstituents
- returns true if the substituent is allowed and false if it is forbidden
to be implemented by the inheriting class
- Specified by:
substituentIsAllowed
in class RuleRingSubstituents
- Throws:
DecisionMethodException
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
- Description copied from class:
RuleRingSubstituents
IDecisionRule.verifyRule(IAtomContainer)
- Specified by:
verifyRule
in interface IDecisionRule
- Overrides:
verifyRule
in class RuleRingSubstituents
- Parameters:
mol
- org.openscience.cdk.interfaces.AtomContainer
- Returns:
- rule result, boolean
- Throws:
DecisionMethodException
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
throws DecisionMethodException
- returns true if only allowed substituents are found
- Overrides:
verifyRule
in class RuleRingSubstituents
- Throws:
DecisionMethodException
Copyright © 2004-2012 Ideaconsult Ltd.. All Rights Reserved.