ToxTree 2.5.4-SNAPSHOT API

Packages
com.molecularnetworks.start  
com.molecularnetworks.start.categories  
com.molecularnetworks.start.rules  
cramer2 Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
cramer2.categories  
cramer2.rules  
eye Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
eye.categories The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree.
eye.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree.
mic  
mic.categories  
mic.rules  
michaelacceptors  
michaelacceptors.categories  
michaelacceptors.rules  
mutant  
mutant.categories  
mutant.descriptors  
mutant.rules  
sicret Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
sicret.categories The package contains implementations of IDecisionCategory categories for SicretRules decision tree.
sicret.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree.
structurefeatures.rules  
toxTree.apps  
toxTree.apps.toxForest  
toxTree.core This packages contains only interface definitions, defining essential classes in toxTree application.
toxtree.data  
toxTree.data Classes that hold the data used in ToxTreeApp
toxTree.exceptions Exceptions defined for toxTree classes
toxTree.io Input output support.
toxTree.io.batch Batch processing facility.
toxTree.logging Logging facility.
toxtree.lookup  
toxtree.plugins.dnabinding  
toxtree.plugins.dnabinding.categories  
toxtree.plugins.dnabinding.rules  
toxtree.plugins.func  
toxtree.plugins.func.categories  
toxtree.plugins.func.rules  
toxtree.plugins.kroes  
toxtree.plugins.kroes.categories  
toxtree.plugins.kroes.rules  
toxtree.plugins.lewis  
toxtree.plugins.lewis.categories  
toxtree.plugins.lewis.rules  
toxtree.plugins.moa  
toxtree.plugins.moa.categories  
toxtree.plugins.moa.rules  
toxtree.plugins.proteinbinding  
toxtree.plugins.proteinbinding.categories  
toxtree.plugins.proteinbinding.rules  
toxtree.plugins.search  
toxtree.plugins.search.categories  
toxtree.plugins.search.rules  
toxtree.plugins.skinsensitisation  
toxtree.plugins.skinsensitisation.categories  
toxtree.plugins.skinsensitisation.rules  
toxtree.plugins.smartcyp  
toxtree.plugins.smartcyp.categories  
toxtree.plugins.smartcyp.rules  
toxtree.plugins.verhaar2 Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from
toxtree.plugins.verhaar2.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
toxTree.qsar  
toxTree.query Various classes
toxTree.query.metabolite  
toxTree.query.remote  
toxTree.tree This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.categories The package contains default implementations of IDecisionCategory categories.
toxTree.tree.cramer Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxTree.tree.demo Two simple demo decision trees.
toxtree.tree.rules  
toxTree.tree.rules The package contains several generic implementations of IDecisionRule rules
toxTree.tree.rules.smarts SMARTS support.
toxTree.tree.stats  
toxtree.ui Base classes for ToxTreeApp user interface
toxTree.ui  
toxtree.ui.actions Actions (derived from AbstractAction used in ToxTreeApp main menu.
toxtree.ui.batch User interface for toxTree.io.batch
toxtree.ui.editors  
toxtree.ui.metabolites  
toxtree.ui.molecule UI classes for viewing and editing a molecule
toxtree.ui.tree User interface for viewing and editing a decision tree IDecisionMethod
toxtree.ui.tree.actions Actions (derived from AbstractAction for the decision tree user interface toxTree.ui.tree
toxtree.ui.tree.categories User interface for viewing and editing categories IDecisionCategory in a decision tree IDecisionMethod
toxTree.ui.tree.categories  
toxtree.ui.tree.molecule  
toxtree.ui.tree.qsar  
toxtree.ui.tree.rules  
toxtree.ui.wizard Wizard support.
verhaar Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action.
verhaar.categories The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree.
verhaar.query  
verhaar.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
verhaar.rules.helper  

 



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