toxTree.tree.rules
Class RuleDescriptor

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.RuleDescriptor
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, XMLSerializable
Direct Known Subclasses:
RuleDescriptorRange, RuleLipinski5

public abstract class RuleDescriptor
extends AbstractRule

An abstract class to allow for descriptor analysis

Author:
Nina Jeliazkova Modified 2005-10-18
See Also:
Serialized Form

Field Summary
protected  org.openscience.cdk.qsar.IDescriptor descriptor
           
protected  java.lang.String descriptorClass
           
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleDescriptor()
           
 
Method Summary
 boolean equals(java.lang.Object obj)
           
 org.openscience.cdk.qsar.IDescriptor getDescriptor()
           
 ambit2.base.interfaces.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection> getSelector()
           
 boolean isImplemented()
           
 void setDescriptor(org.openscience.cdk.qsar.IDescriptor descriptor)
           
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)
           
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface toxTree.core.IDecisionRule
verifyRule
 

Field Detail

descriptor

protected transient org.openscience.cdk.qsar.IDescriptor descriptor

descriptorClass

protected java.lang.String descriptorClass
Constructor Detail

RuleDescriptor

public RuleDescriptor()
Method Detail

getDescriptor

public org.openscience.cdk.qsar.IDescriptor getDescriptor()

setDescriptor

public void setDescriptor(org.openscience.cdk.qsar.IDescriptor descriptor)

isImplemented

public boolean isImplemented()
Specified by:
isImplemented in interface IDecisionRule
Overrides:
isImplemented in class AbstractRule
Returns:
false if the rule is not implemented and true if it is

equals

public boolean equals(java.lang.Object obj)
Overrides:
equals in class AbstractRule

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                          org.openscience.cdk.interfaces.IAtomContainer selected)
                   throws DecisionMethodException
Throws:
DecisionMethodException

getSelector

public ambit2.base.interfaces.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection> getSelector()
Specified by:
getSelector in interface IDecisionRule
Overrides:
getSelector in class AbstractRule


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