Uses of Package
toxTree.tree

Packages that use toxTree.tree
com.molecularnetworks.start   
com.molecularnetworks.start.categories   
com.molecularnetworks.start.rules   
cramer2 Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
cramer2.rules   
eye Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. 
eye.categories The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree. 
eye.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree. 
mic   
mic.categories   
mic.rules   
michaelacceptors   
michaelacceptors.categories   
michaelacceptors.rules   
mutant   
mutant.categories   
mutant.rules   
sicret Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. 
sicret.categories The package contains implementations of IDecisionCategory categories for SicretRules decision tree. 
sicret.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree. 
structurefeatures.rules   
toxTree.apps.toxForest   
toxTree.core This packages contains only interface definitions, defining essential classes in toxTree application. 
toxTree.qsar   
toxTree.tree This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package. 
toxTree.tree.categories The package contains default implementations of IDecisionCategory categories. 
toxTree.tree.cramer Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
toxTree.tree.demo Two simple demo decision trees. 
toxTree.tree.rules The package contains several generic implementations of IDecisionRule rules 
toxTree.tree.rules.smarts SMARTS support. 
toxtree.data   
toxtree.plugins.dnabinding   
toxtree.plugins.dnabinding.categories   
toxtree.plugins.dnabinding.rules   
toxtree.plugins.func   
toxtree.plugins.func.categories   
toxtree.plugins.func.rules   
toxtree.plugins.kroes   
toxtree.plugins.kroes.categories   
toxtree.plugins.kroes.rules   
toxtree.plugins.lewis   
toxtree.plugins.lewis.categories   
toxtree.plugins.lewis.rules   
toxtree.plugins.moa   
toxtree.plugins.moa.categories   
toxtree.plugins.moa.rules   
toxtree.plugins.proteinbinding   
toxtree.plugins.proteinbinding.categories   
toxtree.plugins.proteinbinding.rules   
toxtree.plugins.search   
toxtree.plugins.search.categories   
toxtree.plugins.search.rules   
toxtree.plugins.skinsensitisation   
toxtree.plugins.skinsensitisation.categories   
toxtree.plugins.skinsensitisation.rules   
toxtree.plugins.smartcyp   
toxtree.plugins.smartcyp.categories   
toxtree.plugins.smartcyp.rules   
toxtree.plugins.verhaar2 Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from 
toxtree.plugins.verhaar2.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree. 
toxtree.ui Base classes for ToxTreeApp user interface 
toxtree.ui.tree User interface for viewing and editing a decision tree IDecisionMethod 
toxtree.ui.tree.actions Actions (derived from AbstractAction for the decision tree user interface toxTree.ui.tree 
verhaar Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action. 
verhaar.categories The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree. 
verhaar.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree. 
verhaar.rules.helper   
 

Classes in toxTree.tree used by com.molecularnetworks.start
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by com.molecularnetworks.start.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by com.molecularnetworks.start.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by cramer2
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by cramer2.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
 

Classes in toxTree.tree used by eye
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by eye.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by eye.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by mic
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by mic.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by mic.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by michaelacceptors
AbstractTree
          An astract class, implementing IDecisionMethod interface.
TreeResult
          A default class implementing IDecisionResult
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by michaelacceptors.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by michaelacceptors.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by mutant
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by mutant.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by mutant.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by sicret
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by sicret.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by sicret.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
 

Classes in toxTree.tree used by structurefeatures.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxTree.apps.toxForest
DecisionMethodsList
          A list of IDecisionMethod
DecisionResultsList
           
 

Classes in toxTree.tree used by toxTree.core
RuleResult
          Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
 

Classes in toxTree.tree used by toxTree.qsar
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxTree.tree
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractTree
          An astract class, implementing IDecisionMethod interface.
AbstractTreePrinter
           
AbstractTreeWriter
           
DecisionMethodsList
          A list of IDecisionMethod
DecisionNode
          A decision node to be used in UserDefinedTree.
DecisionNodesList
          A list of DecisionNode, implementing IDecisionRuleList.
DecisionResultsList
           
IDecisionNodesFactory
           
ProgressStatus
           
ProgressStatus.STATUS
           
RuleResult
          Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
 

Classes in toxTree.tree used by toxTree.tree.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxTree.tree.cramer
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
AbstractTree
          An astract class, implementing IDecisionMethod interface.
DefaultCategory
          The default class implementing IDecisionCategory interface
TreeResult
          A default class implementing IDecisionResult
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxTree.tree.demo
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxTree.tree.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
 

Classes in toxTree.tree used by toxTree.tree.rules.smarts
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxtree.data
DecisionMethodsList
          A list of IDecisionMethod
RuleResult
          Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
 

Classes in toxTree.tree used by toxtree.plugins.dnabinding
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.dnabinding.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.dnabinding.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by toxtree.plugins.func
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.func.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.func.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by toxtree.plugins.kroes
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.kroes.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.kroes.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.lewis
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.lewis.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.lewis.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxtree.plugins.moa
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.moa.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.moa.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxtree.plugins.proteinbinding
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.proteinbinding.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.proteinbinding.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by toxtree.plugins.search
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.search.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.search.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
 

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by toxtree.plugins.smartcyp
AbstractTree
          An astract class, implementing IDecisionMethod interface.
RuleResult
          Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
TreeResult
          A default class implementing IDecisionResult
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.smartcyp.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by toxtree.plugins.smartcyp.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
RuleResult
          Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
 

Classes in toxTree.tree used by toxtree.plugins.verhaar2
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by toxtree.plugins.verhaar2.rules
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by toxtree.ui
ProgressStatus
           
 

Classes in toxTree.tree used by toxtree.ui.tree
DecisionNode
          A decision node to be used in UserDefinedTree.
 

Classes in toxTree.tree used by toxtree.ui.tree.actions
DecisionMethodsList
          A list of IDecisionMethod
DecisionNode
          A decision node to be used in UserDefinedTree.
 

Classes in toxTree.tree used by verhaar
AbstractTree
          An astract class, implementing IDecisionMethod interface.
UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Classes in toxTree.tree used by verhaar.categories
DefaultCategory
          The default class implementing IDecisionCategory interface
 

Classes in toxTree.tree used by verhaar.rules
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
TreeResult
          A default class implementing IDecisionResult
 

Classes in toxTree.tree used by verhaar.rules.helper
AbstractRule
          An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
           
 



Copyright © 2004-2012 Ideaconsult Ltd.. All Rights Reserved.