Uses of Class
toxTree.tree.DefaultCategory

Packages that use DefaultCategory
com.molecularnetworks.start.categories   
eye.categories The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree. 
mic.categories   
michaelacceptors.categories   
mutant.categories   
sicret.categories The package contains implementations of IDecisionCategory categories for SicretRules decision tree. 
toxtree.plugins.dnabinding.categories   
toxtree.plugins.func.categories   
toxtree.plugins.kroes.categories   
toxtree.plugins.kroes.rules   
toxtree.plugins.lewis.categories   
toxtree.plugins.moa.categories   
toxtree.plugins.proteinbinding.categories   
toxtree.plugins.search.categories   
toxtree.plugins.skinsensitisation.categories   
toxtree.plugins.smartcyp.categories   
toxTree.tree.categories The package contains default implementations of IDecisionCategory categories. 
toxTree.tree.cramer Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
verhaar.categories The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree. 
 

Uses of DefaultCategory in com.molecularnetworks.start.categories
 

Subclasses of DefaultCategory in com.molecularnetworks.start.categories
 class CategoryBiodegradable
          Class 1 (easily biodegradable chemical).
 class CategoryPersistent
          Class 2 (persistent chemical).
 

Uses of DefaultCategory in eye.categories
 

Subclasses of DefaultCategory in eye.categories
 class CategoryCorrosiveEye
          Assigned when compound is estimated to be corrosive to skin.
 class CategoryCorrosiveSkin
           
 class CategoryModerateIrritation2Eye
           
 class CategoryNotCorrosive2Eye
           
 class CategoryNotCorrosive2Skin
          Assigned when compound is estimated to be not corrosive to skin.
 class CategoryNotCorrosive2SkinAndIrritating2Eye
           
 class CategoryNotCorrosive2SkinEye
           
 class CategoryNotCorrosive2SkinOrIrritating2Eye
           
 class CategoryNotIrritating2Eye
          Assigned when compound is estimated to be not irritating to skin.
 class CategoryNotIrritatingOrCorrosive2Eye
          Assigned when compound is estimated to be not Irritating or corrosive to skin.
 

Uses of DefaultCategory in mic.categories
 

Subclasses of DefaultCategory in mic.categories
 class micronucleusClass1
           
 class micronucleusClass2
           
 

Uses of DefaultCategory in michaelacceptors.categories
 

Subclasses of DefaultCategory in michaelacceptors.categories
 class CategoryMichaelAcceptor
           
 

Uses of DefaultCategory in mutant.categories
 

Subclasses of DefaultCategory in mutant.categories
 class CategoryCarcinogen
           
 class CategoryError
           
 class CategoryMutagenTA100
           
 class CategoryNoGenotoxicAlert
           
 class CategoryNonMutagen
           
 class CategoryNoNongenotoxicAlert
           
 class CategoryNotCarcinogen
           
 class CategoryPositiveAlertGenotoxic
           
 class CategoryPositiveAlertNongenotoxic
           
 class MutantCategory
           
 class QSARApplicable
           
 

Uses of DefaultCategory in sicret.categories
 

Subclasses of DefaultCategory in sicret.categories
 class CategoryCorrosive
          Assigned when compound is estimated to be corrosive to skin.
 class CategoryIrritating
          Assigned when compound is estimated to be irritating to skin.
 class CategoryIrritatingOrCorrosive
          Assigned when compound is estimated to be irritating or corrosive to skin.
 class CategoryNotCorrosive
          Assigned when compound is estimated to be not corrosive to skin.
 class CategoryNotIrritating
          Assigned when compound is estimated to be not irritating to skin.
 class CategoryNotIrritatingOrCorrosive
          Assigned when compound is estimated to be not Irritating or corrosive to skin.
 class CategoryUnknown
          Assigned when SicretRules are not able to estimate skin irritation or corrosive potential.
 

Uses of DefaultCategory in toxtree.plugins.dnabinding.categories
 

Subclasses of DefaultCategory in toxtree.plugins.dnabinding.categories
 class AcylTransferAlerts
          Acyl transfer
 class DNABindingCategory
           
 class MichaelAcceptors
          Michael Acceptors
 class NoAlerts
          No alerts
 class ShiffBaseAlerts
          Shiff base
 class SN1Alerts
          Substrate has structural alerts for Nucleophilic Aromatic Substitution
 class SN2Alerts
          second order nucleophilic aliphatic substitution reaction
 

Uses of DefaultCategory in toxtree.plugins.func.categories
 

Subclasses of DefaultCategory in toxtree.plugins.func.categories
 class FuncCat1
           
 class FuncCat2
           
 

Uses of DefaultCategory in toxtree.plugins.kroes.categories
 

Subclasses of DefaultCategory in toxtree.plugins.kroes.categories
 class NegligibleRisk
           
 class NotASafetyConcern
          Substance would not be expected to be a safety concern
 class RequireCompoundSpecificToxicityData
           
 

Uses of DefaultCategory in toxtree.plugins.kroes.rules
 

Fields in toxtree.plugins.kroes.rules declared as DefaultCategory
protected  DefaultCategory KroesRule8.category
           
 

Uses of DefaultCategory in toxtree.plugins.lewis.categories
 

Subclasses of DefaultCategory in toxtree.plugins.lewis.categories
 class CYP1A2
           
 class CYP2A
           
 class CYP2B
           
 class CYP2C
           
 class CYP2D
           
 class CYP2E
           
 class CYP3A4
           
 

Uses of DefaultCategory in toxtree.plugins.moa.categories
 

Subclasses of DefaultCategory in toxtree.plugins.moa.categories
 class CategoryAcetylcholinesteraseInhibitors
           
 class CategoryCentralNervousSystemSeizureAgents
           
 class CategoryElectrophileProelectrophileReactivity
           
 class CategoryNarcosis1
          Assigned when compound is estimated to be corrosive to skin.
 class CategoryNarcosis2
           
 class CategoryNarcosis3
           
 class CategoryOxidativePhosphorylationUncouplers
           
 

Uses of DefaultCategory in toxtree.plugins.proteinbinding.categories
 

Subclasses of DefaultCategory in toxtree.plugins.proteinbinding.categories
 class ProteinBindingCategory
           
 class SNArAlerts
          Substrate has structural alerts for Nucleophilic Aromatic Substitution
 

Uses of DefaultCategory in toxtree.plugins.search.categories
 

Subclasses of DefaultCategory in toxtree.plugins.search.categories
 class Found
          Not found
 class NotFound
          Not found
 

Uses of DefaultCategory in toxtree.plugins.skinsensitisation.categories
 

Subclasses of DefaultCategory in toxtree.plugins.skinsensitisation.categories
 class SkinSensitisationCategory
           
 

Uses of DefaultCategory in toxtree.plugins.smartcyp.categories
 

Subclasses of DefaultCategory in toxtree.plugins.smartcyp.categories
 class NoSites
           
 class SitesHigherRank
           
 class SitesRank1
           
 class SitesRank2
           
 class SitesRank3
           
 

Uses of DefaultCategory in toxTree.tree.categories
 

Subclasses of DefaultCategory in toxTree.tree.categories
 class DefaultClass1
           
 class DefaultClass2
           
 

Uses of DefaultCategory in toxTree.tree.cramer
 

Subclasses of DefaultCategory in toxTree.tree.cramer
 class CramerClass1
          A DefaultCategory descendant, implementation of Cramer class 1 (see CramerRules)
 class CramerClass2
          A DefaultCategory descendant, implementation of Cramer class 2 (see CramerRules)
 class CramerClass3
          A DefaultCategory descendant, implementation of Cramer class 3 (see CramerRules)
 

Uses of DefaultCategory in verhaar.categories
 

Subclasses of DefaultCategory in verhaar.categories
 class Class1BaselineToxicity
          Class 1 (narcosis or baseline toxicity).
 class Class2LessInertCompounds
          Class 2 (less inert compounds).
 class Class3UnspecificReactivity
          Class 3 (unspecific reactivity).
 class Class4SpecificMechanism
          Class 4 (compounds and groups of compounds acting by a specific mechanism).
 class Class5Unknown
          Class 5 Not possible to classify according to these rules.
 



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